Introduction | Model-Free Idealizations | Models | Review of tools to analyze patchclamp recordings | Discussion
Package: clampSeg 1.2-0
clampSeg: Idealisation of Patch Clamp Recordings
Implements the model-free multiscale idealisation approaches: Jump-Segmentation by MUltiResolution Filter (JSMURF), Hotz et al. (2013) <doi:10.1109/TNB.2013.2284063>, JUmp Local dEconvolution Segmentation filter (JULES), Pein et al. (2018) <doi:10.1109/TNB.2018.2845126>, and Heterogeneous Idealization by Local testing and DEconvolution (HILDE), Pein et al. (2021) <doi:10.1109/TNB.2020.3031202>. Further details on how to use them are given in the accompanying vignette.
Authors:
clampSeg_1.2-0.tar.gz
clampSeg_1.2-0.zip(r-4.7)clampSeg_1.2-0.zip(r-4.6)clampSeg_1.2-0.zip(r-4.5)
clampSeg_1.2-0.tgz(r-4.6-any)clampSeg_1.2-0.tgz(r-4.5-any)
clampSeg_1.2-0.tar.gz(r-4.7-any)clampSeg_1.2-0.tar.gz(r-4.6-any)
clampSeg_1.2-0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
clampSeg/json (API)
| # Install 'clampSeg' in R: |
| install.packages('clampSeg', repos = c('https://florianpein.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- gramA - Patch clamp recording of gramicidin A
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:836c57f552. Checks:8 OK, 1 ERROR. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 175 | ||
| source / vignettes | ERROR | 161 | ||
| linux-release-x86_64 | OK | 166 | ||
| macos-release-arm64 | OK | 127 | ||
| macos-oldrel-arm64 | OK | 139 | ||
| windows-devel | OK | 174 | ||
| windows-release | OK | 159 | ||
| windows-oldrel | OK | 146 | ||
| wasm-release | OK | 102 |
Exports:createLocalListdeconvolveLocallygetCritValhildeimproveSmallScalesjsmurfjuleslowpassFilterstepDetection
Dependencies:digestlowpassFilterR.cacheR.methodsS3R.ooR.utilsRcppstepR
Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.
R packages: LaTeX vignettes
Last update: 2020-08-25
Started: 2020-08-25
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Idealisation of Patch Clamp Recordings | clampSeg-package clampSeg |
| Precomputes quantities for hilde and improveSmallScales | createLocalList |
| Local deconvolution | deconvolveLocally local deconvolution |
| Critical values | getCritVal |
| Patch clamp recording of gramicidin A | gramA gramicidin gramicidin A gramicidinA |
| HILDE | hilde |
| Improves small scales | improveSmallScales |
| JSMURF | jsmurf |
| JULES | jules |
| Lowpass filtering | lowpassFilter print.lowpassFilter |
| Detection of steps / jumps by a multiresolution criterion | detection step stepDetection |
